LOC_Os01g68120.1

Description : dicer-like 3

Gene families : OG_01_0003504 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003504_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g68120.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g68120.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_276
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_214

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	RNA endonuclease activity	None	Extended
MF	GO:0004525	ribonuclease III activity	ISM	GOs from InterProScan
MF	GO:0004540	RNA nuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	RNA endonuclease activity, producing 5'-phosphomonoesters	ISM	GOs from InterProScan
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR038248	Dicer_dimer_sf	Gene3D	528	622
IPR036389	RNase_III_sf	SUPERFAMILY	1185	1355
IPR027417	P-loop_NTPase	Gene3D	334	498
IPR003100	PAZ_dom	Pfam	835	972
IPR000999	RNase_III_dom	ProSiteProfiles	1187	1335
IPR027417	P-loop_NTPase	Gene3D	30	144
IPR000999	RNase_III_dom	SMART	994	1164
IPR000999	RNase_III_dom	SMART	1202	1358
IPR000999	RNase_III_dom	CDD	1203	1358
IPR036389	RNase_III_sf	SUPERFAMILY	968	1161
IPR000999	RNase_III_dom	ProSiteProfiles	977	1146
IPR003100	PAZ_dom	ProSiteProfiles	839	925
IPR003100	PAZ_dom	SMART	796	976
IPR001650	Helicase_C	Pfam	356	462
IPR036085	PAZ_dom_sf	SUPERFAMILY	835	948
IPR027417	P-loop_NTPase	SUPERFAMILY	50	488
IPR005034	Dicer_dimerisation_dom	ProSiteProfiles	533	623
IPR001650	Helicase_C	ProSiteProfiles	348	509
IPR000999	RNase_III_dom	ProSitePatterns	1223	1231
IPR036389	RNase_III_sf	Gene3D	971	1158
IPR036389	RNase_III_sf	Gene3D	1185	1358
IPR000999	RNase_III_dom	Pfam	1012	1143
IPR000999	RNase_III_dom	Pfam	1223	1334
IPR001650	Helicase_C	SMART	379	465
IPR000999	RNase_III_dom	CDD	995	1167

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os01g68120.1

Expression Profile

Co-expression Networks

Functional Annotation