LOC_Os01g72310.1

Description : SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein

Gene families : OG_01_0009084 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009084_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g72310.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g72310.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_376
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_112

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	ISM	GOs from InterProScan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR011124	Znf_CW	ProSiteProfiles	507	558
IPR038718	SNF2-like_sf	Gene3D	679	869
IPR014001	Helicase_ATP-bd	SMART	277	836
IPR011124	Znf_CW	Pfam	512	555
IPR027417	P-loop_NTPase	Gene3D	1060	1288
IPR001650	Helicase_C	ProSiteProfiles	1116	1260
IPR027417	P-loop_NTPase	SUPERFAMILY	269	363
IPR027417	P-loop_NTPase	SUPERFAMILY	690	861
IPR014001	Helicase_ATP-bd	ProSiteProfiles	660	825
IPR027417	P-loop_NTPase	SUPERFAMILY	766	1255
IPR001650	Helicase_C	Pfam	1126	1222
IPR000330	SNF2_N	Pfam	284	908
IPR017907	Znf_RING_CS	ProSitePatterns	1003	1012
IPR001810	F-box_dom	ProSiteProfiles	233	269
IPR036047	F-box-like_dom_sf	SUPERFAMILY	231	271
IPR001650	Helicase_C	SMART	1140	1222

No CAZYmes available for this sequence

External Links

No external refs found!