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  5. LOC_Os01g72540.1

LOC_Os01g72540.1


Description : calmodulin-like 41


Gene families : OG_01_0012208 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012208_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os01g72540.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os01g72540.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_126
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_144


Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002048 EF_hand_dom CDD 6 69
IPR002048 EF_hand_dom ProSiteProfiles 120 151
IPR002048 EF_hand_dom ProSiteProfiles 39 74
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 52 64
IPR002048 EF_hand_dom SMART 6 34
IPR002048 EF_hand_dom SMART 124 151
IPR002048 EF_hand_dom SMART 88 116
IPR002048 EF_hand_dom SMART 43 71
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 133 145
IPR002048 EF_hand_dom Pfam 101 149
IPR011992 EF-hand-dom_pair SUPERFAMILY 5 150
IPR002048 EF_hand_dom ProSiteProfiles 2 37
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 15 27
IPR002048 EF_hand_dom Pfam 6 68

No CAZYmes available for this sequence

No external refs found!