LOC_Os02g01560.1

Description : Ribosomal protein S4 (RPS4A) family protein

Gene families : OG_01_0006237 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006237_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g01560.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g01560.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_233
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_88

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0003735	structural constituent of ribosome	ISM	GOs from InterProScan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	ISM	GOs from InterProScan
BP	GO:0006412	translation	ISM	GOs from InterProScan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR005824	KOW	SMART	174	201
IPR018199	Ribosomal_eS4_N_CS	ProSitePatterns	8	22
IPR002942	S4_RNA-bd	Pfam	50	90
IPR005824	KOW	Pfam	177	211
IPR000876	Ribosomal_eS4	Hamap	7	238
IPR013845	Ribosomal_eS4_central_region	Pfam	95	169
IPR000876	Ribosomal_eS4	PIRSF	1	241
IPR036986	S4_RNA-bd_sf	Gene3D	1	117
IPR041982	Ribosomal_eS4_KOW	CDD	175	229
IPR032277	Ribosomal_eS4_C	Pfam	212	258
IPR038237	Ribosomal_eS4_central_sf	Gene3D	122	172
IPR013843	Ribosomal_eS4_N	Pfam	3	39
IPR002942	S4_RNA-bd	CDD	51	111
IPR014722	Rib_uL2_dom2	Gene3D	175	245
IPR002942	S4_RNA-bd	SMART	42	106
IPR000876	Ribosomal_eS4	PANTHER	221	263
IPR000876	Ribosomal_eS4	PANTHER	2	220

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os02g01560.1

Expression Profile

Co-expression Networks

Functional Annotation