LOC_Os02g01740.1

Description : U5 small nuclear ribonucleoprotein helicase, putative

Gene families : OG_01_0004284 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004284_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g01740.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g01740.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_14
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_129

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR027417	P-loop_NTPase	Gene3D	1555	1759
IPR027417	P-loop_NTPase	Gene3D	1325	1554
IPR036388	WH-like_DNA-bd_sf	Gene3D	1760	1855
IPR001650	Helicase_C	Pfam	745	893
IPR027417	P-loop_NTPase	Gene3D	505	716
IPR027417	P-loop_NTPase	SUPERFAMILY	711	923
IPR011545	DEAD/DEAH_box_helicase_dom	Pfam	1364	1533
IPR001650	Helicase_C	SMART	1644	1732
IPR001650	Helicase_C	SMART	807	895
IPR003593	AAA+_ATPase	SMART	532	716
IPR003593	AAA+_ATPase	SMART	1376	1569
IPR027417	P-loop_NTPase	SUPERFAMILY	459	702
IPR004179	Sec63-dom	SMART	1016	1321
IPR004179	Sec63-dom	SMART	1849	2169
IPR001650	Helicase_C	ProSiteProfiles	734	940
IPR036388	WH-like_DNA-bd_sf	Gene3D	925	1016
IPR036390	WH_DNA-bd_sf	SUPERFAMILY	1760	1861
IPR014756	Ig_E-set	SUPERFAMILY	2056	2173
IPR011545	DEAD/DEAH_box_helicase_dom	Pfam	520	694
IPR041094	Brr2_helicase_PWI	Pfam	281	388
IPR004179	Sec63-dom	Pfam	1017	1317
IPR027417	P-loop_NTPase	Gene3D	717	918
IPR035892	C2_domain_sf	Gene3D	2054	2173
IPR014001	Helicase_ATP-bd	ProSiteProfiles	1371	1548
IPR035892	C2_domain_sf	Gene3D	1216	1324
IPR027417	P-loop_NTPase	SUPERFAMILY	1550	1760
IPR004179	Sec63-dom	Pfam	1849	2167
IPR001650	Helicase_C	ProSiteProfiles	1585	1777
IPR036390	WH_DNA-bd_sf	SUPERFAMILY	923	1028
IPR027417	P-loop_NTPase	SUPERFAMILY	1246	1549
IPR014001	Helicase_ATP-bd	ProSiteProfiles	527	709
IPR014001	Helicase_ATP-bd	SMART	1358	1564
IPR014001	Helicase_ATP-bd	SMART	514	724

No CAZYmes available for this sequence

External Links

No external refs found!