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  5. LOC_Os02g01960.1

LOC_Os02g01960.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0001669 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001669_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g01960.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g01960.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_152
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_58


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 466 576
IPR019734 TPR_repeat ProSiteProfiles 382 415
IPR011990 TPR-like_helical_dom_sf Gene3D 174 283
IPR019734 TPR_repeat ProSiteProfiles 507 540
IPR019734 TPR_repeat SMART 109 142
IPR019734 TPR_repeat SMART 215 248
IPR019734 TPR_repeat SMART 465 498
IPR019734 TPR_repeat SMART 297 330
IPR019734 TPR_repeat SMART 382 415
IPR019734 TPR_repeat SMART 423 456
IPR019734 TPR_repeat SMART 257 290
IPR019734 TPR_repeat SMART 339 372
IPR019734 TPR_repeat SMART 173 206
IPR019734 TPR_repeat SMART 507 540
IPR019734 TPR_repeat ProSiteProfiles 297 330
IPR011990 TPR-like_helical_dom_sf Gene3D 284 465
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 85 250
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 425 564
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 214 419

No CAZYmes available for this sequence

No external refs found!