LOC_Os02g05410.1

Description : splicing factor, putative

Gene families : OG_01_0004616 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004616_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g05410.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g05410.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_245
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_660

Type	GO Term	Name	Evidence	Source
BP	GO:0000245	spliceosomal complex assembly	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0022618	protein-RNA complex assembly	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0071826	protein-RNA complex organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR011989	ARM-like	Gene3D	15	334
IPR011989	ARM-like	Gene3D	335	637
IPR016024	ARM-type_fold	SUPERFAMILY	43	804
IPR021133	HEAT_type_2	ProSiteProfiles	197	235
IPR038737	SF3b_su1-like	PANTHER	26	816
IPR011989	ARM-like	Gene3D	638	802
IPR034085	TOG	SMART	367	628

No CAZYmes available for this sequence

External Links

No external refs found!