LOC_Os02g08300.1

Description : Rad23 UV excision repair protein family

Gene families : OG_01_0008353 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008353_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g08300.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g08300.1	No neighbors in network
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_261

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003684	damaged DNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006289	nucleotide-excision repair	ISM	GOs from InterProScan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	ISM	GOs from InterProScan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR015940	UBA	SMART	146	186
IPR015940	UBA	SMART	327	364
IPR029071	Ubiquitin-like_domsf	SUPERFAMILY	1	80
IPR036353	XPC-bd_sf	SUPERFAMILY	241	308
IPR009060	UBA-like_sf	SUPERFAMILY	310	368
IPR000626	Ubiquitin-like_dom	Pfam	3	76
IPR000626	Ubiquitin-like_dom	ProSiteProfiles	1	79
IPR009060	UBA-like_sf	SUPERFAMILY	142	194
IPR015940	UBA	Pfam	326	362
IPR015940	UBA	Pfam	148	184
IPR015940	UBA	ProSiteProfiles	325	365
IPR004806	Rad23	TIGRFAM	1	370
IPR036353	XPC-bd_sf	Gene3D	236	300
IPR000626	Ubiquitin-like_dom	SMART	1	75
IPR006636	STI1_HS-bd	SMART	243	286
IPR004806	Rad23	PRINTS	353	368
IPR004806	Rad23	PRINTS	321	337
IPR004806	Rad23	PRINTS	271	293
IPR004806	Rad23	PRINTS	338	352
IPR015360	XPC-bd	Pfam	245	300
IPR015940	UBA	ProSiteProfiles	145	187

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os02g08300.1

Expression Profile

Co-expression Networks

Functional Annotation