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  5. LOC_Os02g10080.1

LOC_Os02g10080.1


Description : KH domain-containing protein / zinc finger (CCCH type) family protein


Gene families : OG_01_0000640 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000640_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g10080.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g10080.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_291
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_214


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0003729 mRNA binding ISM GOs from InterProScan
MF GO:0046872 metal ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR036855 Znf_CCCH_sf SUPERFAMILY 265 295
IPR036855 Znf_CCCH_sf SUPERFAMILY 34 60
IPR036612 KH_dom_type_1_sf SUPERFAMILY 161 240
IPR045877 ZFP36-like PANTHER 4 297
IPR000571 Znf_CCCH ProSiteProfiles 33 61
IPR004087 KH_dom SMART 169 239
IPR036612 KH_dom_type_1_sf Gene3D 166 263
IPR000571 Znf_CCCH ProSiteProfiles 265 292
IPR000571 Znf_CCCH Pfam 101 126
IPR000571 Znf_CCCH Pfam 266 291
IPR004088 KH_dom_type_1 Pfam 172 236
IPR000571 Znf_CCCH SMART 99 126
IPR000571 Znf_CCCH SMART 265 291
IPR000571 Znf_CCCH SMART 33 60
IPR036855 Znf_CCCH_sf SUPERFAMILY 98 130
IPR000571 Znf_CCCH ProSiteProfiles 99 127

No CAZYmes available for this sequence

No external refs found!