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  5. LOC_Os02g12780.1

LOC_Os02g12780.1


Description : cytokinin oxidase 5


Gene families : OG_01_0008820 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008820_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g12780.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g12780.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_104
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_426


Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity ISM GOs from InterProScan
BP GO:0009690 cytokinin metabolic process ISM GOs from InterProScan
MF GO:0016491 oxidoreductase activity ISM GOs from InterProScan
MF GO:0019139 cytokinin dehydrogenase activity ISM GOs from InterProScan
MF GO:0050660 flavin adenine dinucleotide binding ISM GOs from InterProScan
MF GO:0071949 FAD binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR016170 Cytok_DH_C_sf Gene3D 236 472
IPR006094 Oxid_FAD_bind_N Pfam 59 202
IPR016167 FAD-bd_PCMH_sub1 Gene3D 40 513
IPR016164 FAD-linked_Oxase-like_C SUPERFAMILY 234 513
IPR036318 FAD-bd_PCMH-like_sf SUPERFAMILY 36 233
IPR016169 FAD-bd_PCMH_sub2 Gene3D 110 235
IPR015345 Cytokinin_DH_FAD/cytokin-bd Pfam 234 513
IPR016166 FAD-bd_PCMH ProSiteProfiles 55 233
IPR006093 Oxy_OxRdtase_FAD_BS ProSitePatterns 59 94
HMM Family HMM Length Query Length e-Value Query Start Query End
AA7 458 525 1.1e-27 53 245
No external refs found!