1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os02g14780.2

LOC_Os02g14780.2


Description : SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein


Gene families : OG_01_0013837 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013837_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g14780.2
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g14780.2
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_14
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_207


Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0006396 RNA processing ISM GOs from InterProScan
BP GO:0045292 mRNA cis splicing, via spliceosome ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR029071 Ubiquitin-like_domsf SUPERFAMILY 686 790
IPR035967 SWAP/Surp_sf SUPERFAMILY 32 106
IPR000626 Ubiquitin-like_dom ProSiteProfiles 733 789
IPR022030 SF3A1_dom Pfam 258 475
IPR035967 SWAP/Surp_sf SUPERFAMILY 159 238
IPR045146 SF3A1 PANTHER 35 792
IPR035967 SWAP/Surp_sf Gene3D 43 113
IPR000061 Surp ProSiteProfiles 58 100
IPR035563 SF3As1_ubi CDD 705 785
IPR000061 Surp ProSiteProfiles 188 230
IPR000626 Ubiquitin-like_dom SMART 708 785
IPR000626 Ubiquitin-like_dom Pfam 731 787
IPR000061 Surp Pfam 58 106
IPR000061 Surp Pfam 186 237
IPR035967 SWAP/Surp_sf Gene3D 181 239
IPR000061 Surp SMART 186 239
IPR000061 Surp SMART 56 109

No CAZYmes available for this sequence

No external refs found!