LOC_Os02g16780.1

Description : expansin 11

Gene families : OG_01_0000144 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000144_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g16780.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g16780.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_2
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_26

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009664	plant-type cell wall organization	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002963	Expansin	PRINTS	166	178
IPR002963	Expansin	PRINTS	106	116
IPR002963	Expansin	PRINTS	243	259
IPR002963	Expansin	PRINTS	64	78
IPR002963	Expansin	PRINTS	93	104
IPR002963	Expansin	PRINTS	214	235
IPR002963	Expansin	PRINTS	142	155
IPR002963	Expansin	PRINTS	125	142
IPR002963	Expansin	PRINTS	178	199
IPR009009	RlpA-like_DPBB	Pfam	70	157
IPR036749	Expansin_CBD_sf	SUPERFAMILY	164	257
IPR007117	Expansin_CBD	ProSiteProfiles	177	257
IPR007112	Expansin/allergen_DPBB_dom	ProSiteProfiles	52	167
IPR007117	Expansin_CBD	Pfam	168	246
IPR007118	Expan_Lol_pI	PRINTS	205	219
IPR007118	Expan_Lol_pI	PRINTS	150	166
IPR007118	Expan_Lol_pI	PRINTS	33	48
IPR007118	Expan_Lol_pI	PRINTS	51	69
IPR007118	Expan_Lol_pI	PRINTS	243	257
IPR007118	Expan_Lol_pI	PRINTS	73	91
IPR007112	Expansin/allergen_DPBB_dom	SMART	69	157
IPR036749	Expansin_CBD_sf	Gene3D	167	262
IPR036908	RlpA-like_sf	SUPERFAMILY	12	185
IPR002963	Expansin	PANTHER	5	262
IPR036908	RlpA-like_sf	Gene3D	19	162

No CAZYmes available for this sequence

External Links

No external refs found!