LOC_Os02g16800.1

Description : expansin 11

Gene families : OG_01_0000144 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000144_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g16800.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g16800.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_2
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_272

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009664	plant-type cell wall organization	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002963	Expansin	PRINTS	182	194
IPR002963	Expansin	PRINTS	80	94
IPR002963	Expansin	PRINTS	122	132
IPR002963	Expansin	PRINTS	194	215
IPR002963	Expansin	PRINTS	109	120
IPR002963	Expansin	PRINTS	230	251
IPR002963	Expansin	PRINTS	259	275
IPR002963	Expansin	PRINTS	158	171
IPR002963	Expansin	PRINTS	141	158
IPR036908	RlpA-like_sf	Gene3D	37	178
IPR007117	Expansin_CBD	ProSiteProfiles	193	273
IPR007112	Expansin/allergen_DPBB_dom	SMART	85	173
IPR007112	Expansin/allergen_DPBB_dom	ProSiteProfiles	68	183
IPR002963	Expansin	PANTHER	6	278
IPR036749	Expansin_CBD_sf	Gene3D	183	278
IPR036908	RlpA-like_sf	SUPERFAMILY	49	201
IPR007117	Expansin_CBD	Pfam	184	262
IPR036749	Expansin_CBD_sf	SUPERFAMILY	180	273
IPR009009	RlpA-like_DPBB	Pfam	86	173
IPR007118	Expan_Lol_pI	PRINTS	221	235
IPR007118	Expan_Lol_pI	PRINTS	89	107
IPR007118	Expan_Lol_pI	PRINTS	166	182
IPR007118	Expan_Lol_pI	PRINTS	67	85
IPR007118	Expan_Lol_pI	PRINTS	259	273
IPR007118	Expan_Lol_pI	PRINTS	49	64

No CAZYmes available for this sequence

External Links

No external refs found!