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  5. LOC_Os02g19770.1

LOC_Os02g19770.1


Description : Nucleic acid-binding, OB-fold-like protein


Gene families : OG_01_0006864 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006864_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g19770.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g19770.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_345
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_115


Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0003743 translation initiation factor activity ISM GOs from InterProScan
BP GO:0006413 translational initiation ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001253 TIF_eIF-1A TIGRFAM 14 110
IPR006196 RNA-binding_domain_S1_IF1 Pfam 32 93
IPR001253 TIF_eIF-1A CDD 33 109
IPR001253 TIF_eIF-1A SMART 28 110
IPR012340 NA-bd_OB-fold SUPERFAMILY 2 138
IPR001253 TIF_eIF-1A PANTHER 1 142
IPR001253 TIF_eIF-1A Hamap 16 110
IPR018104 TIF_eIF-1A_CS ProSitePatterns 41 63
IPR006196 RNA-binding_domain_S1_IF1 ProSiteProfiles 22 96

No CAZYmes available for this sequence

No external refs found!