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  5. LOC_Os02g20160.1

LOC_Os02g20160.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0002079 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002079_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g20160.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g20160.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_192
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_29


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 86 200
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 318 352
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 248 282
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 353 387
IPR011990 TPR-like_helical_dom_sf Gene3D 207 311
IPR011990 TPR-like_helical_dom_sf Gene3D 402 539
IPR002885 Pentatricopeptide_rpt Pfam 317 365
IPR002885 Pentatricopeptide_rpt TIGRFAM 356 388
IPR002885 Pentatricopeptide_rpt TIGRFAM 251 283
IPR002885 Pentatricopeptide_rpt TIGRFAM 321 354
IPR002885 Pentatricopeptide_rpt TIGRFAM 285 318
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 260 417
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 458 492
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 283 317
IPR002885 Pentatricopeptide_rpt Pfam 278 311
IPR011990 TPR-like_helical_dom_sf Gene3D 312 383
IPR002885 Pentatricopeptide_rpt Pfam 465 490

No CAZYmes available for this sequence

No external refs found!