LOC_Os02g20430.1

Description : Transducin/WD40 repeat-like superfamily protein

Gene families : OG_01_0005294 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005294_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g20430.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g20430.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_368
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_122

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006283	transcription-coupled nucleotide-excision repair	ISM	GOs from InterProScan
BP	GO:0006289	nucleotide-excision repair	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR042238	Rad28/ERCC8/Ckn1/ATCSA-1	PANTHER	170	243
IPR042238	Rad28/ERCC8/Ckn1/ATCSA-1	PANTHER	247	371
IPR042238	Rad28/ERCC8/Ckn1/ATCSA-1	PANTHER	1	171
IPR001680	WD40_rpt	ProSiteProfiles	311	343
IPR001680	WD40_rpt	SMART	34	73
IPR001680	WD40_rpt	SMART	90	132
IPR001680	WD40_rpt	SMART	155	193
IPR001680	WD40_rpt	SMART	304	343
IPR036322	WD40_repeat_dom_sf	SUPERFAMILY	41	350
IPR001680	WD40_rpt	ProSiteProfiles	99	141
IPR001680	WD40_rpt	Pfam	308	343
IPR001680	WD40_rpt	Pfam	100	132
IPR001680	WD40_rpt	Pfam	169	193
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	3	346
IPR020472	G-protein_beta_WD-40_rep	PRINTS	119	133
IPR020472	G-protein_beta_WD-40_rep	PRINTS	180	194
IPR020472	G-protein_beta_WD-40_rep	PRINTS	60	74
IPR001680	WD40_rpt	ProSiteProfiles	180	195

No CAZYmes available for this sequence

External Links

No external refs found!