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  5. LOC_Os02g25940.1

LOC_Os02g25940.1


Description : Histone superfamily protein


Gene families : OG_01_0000045 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000045_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g25940.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g25940.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_239
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_242


Type GO Term Name Evidence Source
CC GO:0000786 nucleosome ISM GOs from InterProScan
MF GO:0003677 DNA binding ISM GOs from InterProScan
MF GO:0046982 protein heterodimerization activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000164 Histone_H3/CENP-A ProSitePatterns 46 54
IPR000164 Histone_H3/CENP-A SMART 13 115
IPR009072 Histone-fold SUPERFAMILY 3 112
IPR009072 Histone-fold Gene3D 1 115
IPR000164 Histone_H3/CENP-A PANTHER 3 114
IPR000164 Histone_H3/CENP-A PRINTS 93 114
IPR000164 Histone_H3/CENP-A PRINTS 37 54
IPR000164 Histone_H3/CENP-A PRINTS 77 93
IPR000164 Histone_H3/CENP-A PRINTS 13 34
IPR000164 Histone_H3/CENP-A PRINTS 59 77
IPR007125 Histone_H2A/H2B/H3 Pfam 8 111

No CAZYmes available for this sequence

No external refs found!