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  5. LOC_Os02g29130.1

LOC_Os02g29130.1


Description : ankyrin repeat family protein


Gene families : OG_01_0021405 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0021405_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g29130.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g29130.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_240
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_263


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002110 Ankyrin_rpt SMART 171 200
IPR002110 Ankyrin_rpt SMART 204 236
IPR002110 Ankyrin_rpt SMART 140 169
IPR002110 Ankyrin_rpt SMART 63 104
IPR002110 Ankyrin_rpt SMART 107 136
IPR036770 Ankyrin_rpt-contain_sf Gene3D 12 229
IPR036770 Ankyrin_rpt-contain_sf SUPERFAMILY 20 225
IPR019734 TPR_repeat SMART 260 293
IPR019734 TPR_repeat SMART 328 361
IPR002110 Ankyrin_rpt Pfam 82 167
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 262 372
IPR019734 TPR_repeat ProSiteProfiles 328 361
IPR002110 Ankyrin_rpt ProSiteProfiles 107 139
IPR011990 TPR-like_helical_dom_sf Gene3D 260 373
IPR002110 Ankyrin_rpt ProSiteProfiles 171 203

No CAZYmes available for this sequence

No external refs found!