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  5. Sevir.4G099800.1

Sevir.4G099800.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0014610 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014610_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.4G099800.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.4G099800.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_109
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_111


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 224 258
IPR002885 Pentatricopeptide_rpt Pfam 299 325
IPR002885 Pentatricopeptide_rpt Pfam 226 256
IPR002885 Pentatricopeptide_rpt Pfam 399 424
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 325 359
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 193 223
IPR002885 Pentatricopeptide_rpt Pfam 327 372
IPR002885 Pentatricopeptide_rpt Pfam 192 220
IPR002885 Pentatricopeptide_rpt TIGRFAM 400 423
IPR002885 Pentatricopeptide_rpt TIGRFAM 195 224
IPR002885 Pentatricopeptide_rpt TIGRFAM 226 259
IPR002885 Pentatricopeptide_rpt TIGRFAM 328 360
IPR002885 Pentatricopeptide_rpt TIGRFAM 299 325
IPR032867 DYW_dom Pfam 499 622
IPR011990 TPR-like_helical_dom_sf Gene3D 75 298
IPR011990 TPR-like_helical_dom_sf Gene3D 301 558

No CAZYmes available for this sequence

No external refs found!