- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0013594 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013594_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g32780.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g32780.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_245 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_140 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | Pfam | 421 | 442 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 722 | 744 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 651 | 678 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 273 | 297 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 447 | 481 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 648 | 682 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 28 | 136 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 446 | 493 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 69 | 115 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 169 | 215 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 68 | 102 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 170 | 204 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 449 | 483 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 70 | 104 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 172 | 206 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 370 | 513 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 188 | 369 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 617 | 784 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 205 | 239 |
No CAZYmes available for this sequence
| No external refs found! |