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  5. LOC_Os02g34860.1

LOC_Os02g34860.1


Description : Regulator of chromosome condensation (RCC1) family protein


Gene families : OG_01_0003212 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003212_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g34860.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g34860.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_171
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_21


Type GO Term Name Evidence Source
MF GO:0009881 photoreceptor activity ISM GOs from InterProScan
BP GO:0010224 response to UV-B ISM GOs from InterProScan
MF GO:0042803 protein homodimerization activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000408 Reg_chr_condens ProSiteProfiles 205 256
IPR000408 Reg_chr_condens ProSiteProfiles 44 99
IPR000408 Reg_chr_condens ProSiteProfiles 309 360
IPR000408 Reg_chr_condens ProSitePatterns 295 305
IPR000408 Reg_chr_condens ProSitePatterns 191 201
IPR000408 Reg_chr_condens ProSitePatterns 347 357
IPR000408 Reg_chr_condens PRINTS 207 221
IPR000408 Reg_chr_condens PRINTS 45 61
IPR000408 Reg_chr_condens PRINTS 356 377
IPR000408 Reg_chr_condens PRINTS 103 119
IPR000408 Reg_chr_condens PRINTS 153 169
IPR000408 Reg_chr_condens PRINTS 191 207
IPR000408 Reg_chr_condens PRINTS 298 316
IPR009091 RCC1/BLIP-II Gene3D 9 75
IPR000408 Reg_chr_condens Pfam 44 95
IPR000408 Reg_chr_condens Pfam 256 305
IPR000408 Reg_chr_condens Pfam 308 357
IPR000408 Reg_chr_condens Pfam 102 149
IPR000408 Reg_chr_condens Pfam 204 252
IPR000408 Reg_chr_condens Pfam 153 201
IPR000408 Reg_chr_condens Pfam 362 394
IPR000408 Reg_chr_condens ProSiteProfiles 101 152
IPR009091 RCC1/BLIP-II Gene3D 76 403
IPR009091 RCC1/BLIP-II SUPERFAMILY 163 398
IPR000408 Reg_chr_condens ProSiteProfiles 361 426
IPR009091 RCC1/BLIP-II SUPERFAMILY 25 234
IPR000408 Reg_chr_condens ProSiteProfiles 153 204
IPR000408 Reg_chr_condens ProSitePatterns 243 253
IPR000408 Reg_chr_condens ProSitePatterns 30 40
IPR000408 Reg_chr_condens ProSiteProfiles 257 308

No CAZYmes available for this sequence

No external refs found!