Sevir.1G135100.1

Description : RNA helicase family protein

Gene families : OG_01_0004406 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004406_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.1G135100.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.1G135100.1	No neighbors in network
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_158

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003724	RNA helicase activity	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008186	ATP-dependent activity, acting on RNA	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR027417	P-loop_NTPase	Gene3D	539	744
IPR011545	DEAD/DEAH_box_helicase_dom	Pfam	575	725
IPR007502	Helicase-assoc_dom	SMART	960	1050
IPR003029	S1_domain	ProSiteProfiles	266	336
IPR044762	DHX8/Prp22_DEXHc	CDD	564	742
IPR003029	S1_domain	Pfam	264	335
IPR027417	P-loop_NTPase	SUPERFAMILY	560	1092
IPR001650	Helicase_C	ProSiteProfiles	760	940
IPR011709	DEAD-box_helicase_OB_fold	Pfam	1107	1182
IPR014001	Helicase_ATP-bd	ProSiteProfiles	579	742
IPR002464	DNA/RNA_helicase_DEAH_CS	ProSitePatterns	684	693
IPR027417	P-loop_NTPase	Gene3D	745	919
IPR012340	NA-bd_OB-fold	SUPERFAMILY	264	344
IPR007502	Helicase-assoc_dom	Pfam	961	1049
IPR014001	Helicase_ATP-bd	SMART	567	751
IPR001650	Helicase_C	Pfam	767	899
IPR001650	Helicase_C	SMART	795	899

No CAZYmes available for this sequence

External Links

No external refs found!

Sevir.1G135100.1

Expression Profile

Co-expression Networks

Functional Annotation