LOC_Os02g38210.1

Description : RAB GTPase homolog E1B

Gene families : OG_01_0015838 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015838_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g38210.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g38210.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_241
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_179

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003746	translation elongation factor activity	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	ISM	GOs from InterProScan
BP	GO:0006414	translational elongation	ISM	GOs from InterProScan
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR000795	T_Tr_GTP-bd_dom	PRINTS	72	85
IPR000795	T_Tr_GTP-bd_dom	PRINTS	189	198
IPR000795	T_Tr_GTP-bd_dom	PRINTS	152	163
IPR000795	T_Tr_GTP-bd_dom	PRINTS	116	124
IPR000795	T_Tr_GTP-bd_dom	PRINTS	136	146
IPR004541	Transl_elong_EFTu/EF1A_bac/org	TIGRFAM	60	467
IPR033720	EFTU_2	CDD	279	364
IPR031157	G_TR_CS	ProSitePatterns	109	124
IPR041709	EF-Tu_GTP-bd	CDD	69	271
IPR004541	Transl_elong_EFTu/EF1A_bac/org	Hamap	59	467
IPR000795	T_Tr_GTP-bd_dom	ProSiteProfiles	68	272
IPR027417	P-loop_NTPase	Gene3D	59	271
IPR027417	P-loop_NTPase	SUPERFAMILY	67	294
IPR000795	T_Tr_GTP-bd_dom	Pfam	68	269
IPR004160	Transl_elong_EFTu/EF1A_C	Pfam	366	465
IPR005225	Small_GTP-bd_dom	TIGRFAM	71	203
IPR004161	EFTu-like_2	Pfam	293	361
IPR009001	Transl_elong_EF1A/Init_IF2_C	SUPERFAMILY	366	466
IPR009000	Transl_B-barrel_sf	SUPERFAMILY	273	369

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os02g38210.1

Expression Profile

Co-expression Networks

Functional Annotation