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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0015176 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015176_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g38950.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g38950.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_297 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_33 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 431 | 465 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 187 | 208 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 118 | 147 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 359 | 403 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 117 | 148 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 434 | 465 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 255 | 289 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 290 | 324 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 362 | 395 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 220 | 253 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 327 | 358 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 243 | 297 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 359 | 393 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 288 | 322 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 407 | 499 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 200 | 298 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 89 | 199 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 299 | 406 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 218 | 252 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 323 | 358 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 253 | 287 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 115 | 149 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 430 | 459 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 319 | 348 |
No CAZYmes available for this sequence
| No external refs found! |