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  5. Sevir.4G104800.1

Sevir.4G104800.1


Description : xyloglucan endotransglucosylase/hydrolase 1


Gene families : OG_01_0023984 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0023984_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.4G104800.1 No neighbors in network
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.4G104800.1
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_313


Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds ISM GOs from InterProScan
CC GO:0005618 cell wall ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
BP GO:0006073 obsolete cellular glucan metabolic process ISM GOs from InterProScan
BP GO:0010411 xyloglucan metabolic process ISM GOs from InterProScan
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity ISM GOs from InterProScan
BP GO:0042546 cell wall biogenesis ISM GOs from InterProScan
CC GO:0048046 apoplast ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000757 GH16 ProSiteProfiles 21 225
IPR016455 XTH PIRSF 4 295
IPR000757 GH16 Pfam 34 218
IPR016455 XTH CDD 33 290
IPR044791 Beta-glucanase/XTH PANTHER 9 293
IPR013320 ConA-like_dom_sf SUPERFAMILY 46 293
IPR008264 Beta_glucanase PRINTS 65 83
IPR008264 Beta_glucanase PRINTS 143 160
IPR008264 Beta_glucanase PRINTS 125 138
IPR010713 XET_C Pfam 243 290

No CAZYmes available for this sequence

No external refs found!