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  5. LOC_Os02g39700.1

LOC_Os02g39700.1


Description : La protein 1


Gene families : OG_01_0003030 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003030_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g39700.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g39700.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_261
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_37


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
CC GO:0005634 nucleus ISM GOs from InterProScan
BP GO:0006396 RNA processing ISM GOs from InterProScan
CC GO:1990904 ribonucleoprotein complex ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR036388 WH-like_DNA-bd_sf Gene3D 6 108
IPR014886 La_xRRM Pfam 331 431
IPR045180 La_dom_prot PANTHER 3 467
IPR036390 WH_DNA-bd_sf SUPERFAMILY 12 108
IPR014886 La_xRRM ProSiteProfiles 318 448
IPR035979 RBD_domain_sf SUPERFAMILY 119 380
IPR000504 RRM_dom SMART 333 401
IPR000504 RRM_dom SMART 122 194
IPR006630 La_HTH Pfam 18 87
IPR002344 Lupus_La PRINTS 162 180
IPR002344 Lupus_La PRINTS 21 38
IPR002344 Lupus_La PRINTS 47 62
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 114 214
IPR000504 RRM_dom ProSiteProfiles 121 198
IPR006630 La_HTH SMART 12 105
IPR000504 RRM_dom Pfam 128 186
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 314 431
IPR006630 La_HTH ProSiteProfiles 8 113

No CAZYmes available for this sequence

No external refs found!