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  5. LOC_Os02g42590.1

LOC_Os02g42590.1


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_01_0006107 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006107_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g42590.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g42590.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_193
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_67


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR020472 G-protein_beta_WD-40_rep PRINTS 337 351
IPR020472 G-protein_beta_WD-40_rep PRINTS 481 495
IPR020472 G-protein_beta_WD-40_rep PRINTS 439 453
IPR001680 WD40_rpt ProSiteProfiles 318 359
IPR001680 WD40_rpt ProSiteProfiles 421 461
IPR001680 WD40_rpt ProSiteProfiles 461 503
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 316 632
IPR001680 WD40_rpt Pfam 458 494
IPR001680 WD40_rpt Pfam 318 349
IPR001680 WD40_rpt Pfam 416 451
IPR019775 WD40_repeat_CS ProSitePatterns 337 351
IPR001680 WD40_rpt SMART 547 587
IPR001680 WD40_rpt SMART 311 350
IPR001680 WD40_rpt SMART 414 452
IPR001680 WD40_rpt SMART 497 535
IPR001680 WD40_rpt SMART 455 494
IPR001680 WD40_rpt SMART 588 629
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 306 670
IPR040324 WDR44/Dgr2 PANTHER 9 772

No CAZYmes available for this sequence

No external refs found!