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  5. LOC_Os02g42650.1

LOC_Os02g42650.1


Description : expansin B3


Gene families : OG_01_0011984 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011984_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g42650.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g42650.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_71
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_137


Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM GOs from InterProScan
BP GO:0019953 sexual reproduction ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR036908 RlpA-like_sf Gene3D 32 169
IPR007117 Expansin_CBD Pfam 175 256
IPR005795 LolPI PRINTS 222 239
IPR005795 LolPI PRINTS 83 94
IPR005795 LolPI PRINTS 145 160
IPR005795 LolPI PRINTS 123 138
IPR005795 LolPI PRINTS 193 208
IPR005795 LolPI PRINTS 177 192
IPR007112 Expansin/allergen_DPBB_dom SMART 81 163
IPR009009 RlpA-like_DPBB Pfam 83 161
IPR007112 Expansin/allergen_DPBB_dom ProSiteProfiles 63 173
IPR007118 Expan_Lol_pI PRINTS 253 267
IPR007118 Expan_Lol_pI PRINTS 62 80
IPR007118 Expan_Lol_pI PRINTS 156 172
IPR007118 Expan_Lol_pI PRINTS 44 59
IPR007118 Expan_Lol_pI PRINTS 214 228
IPR007118 Expan_Lol_pI PRINTS 85 103
IPR007117 Expansin_CBD ProSiteProfiles 186 267
IPR036749 Expansin_CBD_sf Gene3D 170 272
IPR036908 RlpA-like_sf SUPERFAMILY 40 172
IPR036749 Expansin_CBD_sf SUPERFAMILY 173 267
HMM Family HMM Length Query Length e-Value Query Start Query End
CBM63 78 273 0.00088 177 245
No external refs found!