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  5. LOC_Os02g44480.1

LOC_Os02g44480.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0019647 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0019647_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g44480.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g44480.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_115
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_157


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 71 118
IPR002885 Pentatricopeptide_rpt Pfam 374 422
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 71 105
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 274 308
IPR011990 TPR-like_helical_dom_sf Gene3D 2 141
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 410 440
IPR011990 TPR-like_helical_dom_sf Gene3D 142 231
IPR011990 TPR-like_helical_dom_sf Gene3D 335 424
IPR002885 Pentatricopeptide_rpt TIGRFAM 450 473
IPR002885 Pentatricopeptide_rpt TIGRFAM 277 310
IPR002885 Pentatricopeptide_rpt TIGRFAM 73 106
IPR002885 Pentatricopeptide_rpt TIGRFAM 377 411
IPR002885 Pentatricopeptide_rpt TIGRFAM 412 439
IPR011990 TPR-like_helical_dom_sf Gene3D 425 555
IPR002885 Pentatricopeptide_rpt Pfam 175 204
IPR002885 Pentatricopeptide_rpt Pfam 277 304
IPR002885 Pentatricopeptide_rpt Pfam 45 70
IPR002885 Pentatricopeptide_rpt Pfam 449 473
IPR002885 Pentatricopeptide_rpt Pfam 349 369
IPR002885 Pentatricopeptide_rpt Pfam 146 167
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 375 409
IPR011990 TPR-like_helical_dom_sf Gene3D 232 334

No CAZYmes available for this sequence

No external refs found!