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Description : endonucleases
Gene families : OG_01_0011559 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011559_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g47360.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g47360.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_147 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_152 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004519 | endonuclease activity | ISM | GOs from InterProScan |
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 439 | 542 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 512 | 540 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 191 | 216 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 476 | 505 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 373 | 405 |
| IPR027434 | Homing_endonucl | SUPERFAMILY | 564 | 754 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 182 | 216 |
| IPR027434 | Homing_endonucl | Gene3D | 665 | 762 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 369 | 403 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 121 | 284 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 297 | 438 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 473 | 507 |
| IPR027434 | Homing_endonucl | Gene3D | 549 | 663 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 191 | 213 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 512 | 539 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 476 | 504 |
| IPR004860 | LAGLIDADG_2 | Pfam | 576 | 742 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 371 | 415 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 509 | 543 |
No CAZYmes available for this sequence
| No external refs found! |