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  5. LOC_Os02g48880.1

LOC_Os02g48880.1


Description : chloride channel F


Gene families : OG_01_0000292 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000292_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g48880.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g48880.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_83
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_161


Type GO Term Name Evidence Source
MF GO:0005247 voltage-gated chloride channel activity ISM GOs from InterProScan
BP GO:0006821 chloride transport ISM GOs from InterProScan
CC GO:0016020 membrane ISM GOs from InterProScan
BP GO:0055085 transmembrane transport ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000644 CBS_dom Pfam 611 663
IPR014743 Cl-channel_core SUPERFAMILY 124 547
IPR001807 Cl-channel_volt-gated Pfam 198 543
IPR001807 Cl-channel_volt-gated PRINTS 226 245
IPR001807 Cl-channel_volt-gated PRINTS 495 511
IPR001807 Cl-channel_volt-gated PRINTS 513 532
IPR001807 Cl-channel_volt-gated PRINTS 454 474
IPR001807 Cl-channel_volt-gated PRINTS 277 296
IPR000644 CBS_dom ProSiteProfiles 615 672

No CAZYmes available for this sequence

No external refs found!