LOC_Os02g49090.1

Description : varicose-related

Gene families : OG_01_0004744 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004744_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g49090.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g49090.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_315
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_67

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0031087	deadenylation-independent decapping of nuclear-transcribed mRNA	ISM	GOs from InterProScan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0110154	RNA decapping	None	Extended
BP	GO:0110156	methylguanosine-cap decapping	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR032401	EDC4_WD40	Pfam	200	513
IPR036322	WD40_repeat_dom_sf	SUPERFAMILY	219	512
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	199	558
IPR001680	WD40_rpt	ProSiteProfiles	367	400
IPR044938	EDC4_C_sf	Gene3D	1251	1337
IPR001680	WD40_rpt	SMART	241	281
IPR001680	WD40_rpt	SMART	363	400
IPR001680	WD40_rpt	SMART	403	449
IPR045152	EDC4-like	PANTHER	1	1339
IPR001680	WD40_rpt	ProSiteProfiles	248	290

No CAZYmes available for this sequence

External Links

No external refs found!