LOC_Os02g49820.1

Description : RNA-binding (RRM/RBD/RNP motifs) family protein

Gene families : OG_01_0014508 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014508_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g49820.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g49820.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_41
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_214

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016553	base conversion or substitution editing	None	Extended
BP	GO:0016554	cytidine to uridine editing	ISM	GOs from InterProScan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR037045	S8pro/Inhibitor_I9_sf	Gene3D	174	267
IPR037045	S8pro/Inhibitor_I9_sf	Gene3D	62	155
IPR000504	RRM_dom	Pfam	297	363
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	268	399
IPR039206	MORF/ORRM1/DAG-like	PANTHER	42	375
IPR000504	RRM_dom	SMART	296	369
IPR035979	RBD_domain_sf	SUPERFAMILY	290	396
IPR000504	RRM_dom	ProSiteProfiles	295	373

No CAZYmes available for this sequence

External Links

No external refs found!