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  5. LOC_Os02g49830.1

LOC_Os02g49830.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0016571 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016571_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g49830.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g49830.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_192
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_61


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 160 208
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 298 332
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 130 164
IPR011990 TPR-like_helical_dom_sf Gene3D 225 463
IPR011990 TPR-like_helical_dom_sf Gene3D 34 159
IPR002885 Pentatricopeptide_rpt Pfam 160 201
IPR002885 Pentatricopeptide_rpt Pfam 262 310
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 276 424
IPR002885 Pentatricopeptide_rpt TIGRFAM 163 198
IPR002885 Pentatricopeptide_rpt TIGRFAM 300 331
IPR002885 Pentatricopeptide_rpt TIGRFAM 132 163
IPR002885 Pentatricopeptide_rpt TIGRFAM 267 298
IPR002885 Pentatricopeptide_rpt Pfam 337 356
IPR002885 Pentatricopeptide_rpt Pfam 238 261
IPR002885 Pentatricopeptide_rpt Pfam 104 127
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 263 297

No CAZYmes available for this sequence

No external refs found!