LOC_Os02g50730.1

Description : matrix metalloproteinase

Gene families : OG_01_0013355 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013355_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g50730.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g50730.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_37
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_23

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004222	metalloendopeptidase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006508	proteolysis	ISM	GOs from InterProScan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008237	metallopeptidase activity	ISM	GOs from InterProScan
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
CC	GO:0031012	extracellular matrix	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR006026	Peptidase_Metallo	SMART	156	324
IPR024079	MetalloPept_cat_dom_sf	Gene3D	50	329
IPR033739	M10A_MMP	CDD	164	323
IPR001818	Pept_M10_metallopeptidase	Pfam	164	323
IPR021190	Pept_M10A	PRINTS	310	323
IPR021190	Pept_M10A	PRINTS	119	132
IPR021190	Pept_M10A	PRINTS	212	240
IPR021190	Pept_M10A	PRINTS	276	301
IPR021190	Pept_M10A	PRINTS	188	203
IPR036365	PGBD-like_sf	SUPERFAMILY	53	129
IPR002477	Peptidoglycan-bd-like	Pfam	61	119

No CAZYmes available for this sequence

External Links

No external refs found!