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  5. LOC_Os02g50740.1

LOC_Os02g50740.1


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_01_0005766 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005766_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g50740.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g50740.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_306
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_200


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001680 WD40_rpt ProSiteProfiles 197 238
IPR001680 WD40_rpt ProSiteProfiles 240 270
IPR045182 JINGUBANG-like PANTHER 20 423
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 184 424
IPR001680 WD40_rpt SMART 52 92
IPR001680 WD40_rpt SMART 278 317
IPR001680 WD40_rpt SMART 232 271
IPR001680 WD40_rpt SMART 111 150
IPR001680 WD40_rpt SMART 370 422
IPR001680 WD40_rpt SMART 190 229
IPR001680 WD40_rpt SMART 325 362
IPR001680 WD40_rpt ProSiteProfiles 285 317
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 37 168
IPR020472 G-protein_beta_WD-40_rep PRINTS 409 423
IPR020472 G-protein_beta_WD-40_rep PRINTS 349 363
IPR020472 G-protein_beta_WD-40_rep PRINTS 216 230
IPR001680 WD40_rpt ProSiteProfiles 332 361
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 60 422
IPR001680 WD40_rpt Pfam 242 270
IPR001680 WD40_rpt Pfam 199 229
IPR001680 WD40_rpt Pfam 372 422
IPR001680 WD40_rpt Pfam 329 361
IPR001680 WD40_rpt Pfam 56 91
IPR001680 WD40_rpt Pfam 282 316

No CAZYmes available for this sequence

No external refs found!