LOC_Os02g51040.1

Description : expansin A1

Gene families : OG_01_0000144 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000144_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g51040.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g51040.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_207
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_116

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009664	plant-type cell wall organization	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002963	Expansin	PRINTS	136	146
IPR002963	Expansin	PRINTS	196	208
IPR002963	Expansin	PRINTS	94	108
IPR002963	Expansin	PRINTS	155	172
IPR002963	Expansin	PRINTS	244	265
IPR002963	Expansin	PRINTS	208	229
IPR002963	Expansin	PRINTS	172	185
IPR002963	Expansin	PRINTS	273	289
IPR036749	Expansin_CBD_sf	SUPERFAMILY	194	286
IPR002963	Expansin	PANTHER	61	291
IPR007117	Expansin_CBD	Pfam	198	276
IPR036908	RlpA-like_sf	Gene3D	51	193
IPR036908	RlpA-like_sf	SUPERFAMILY	63	215
IPR009009	RlpA-like_DPBB	Pfam	99	187
IPR007112	Expansin/allergen_DPBB_dom	ProSiteProfiles	82	197
IPR036749	Expansin_CBD_sf	Gene3D	195	290
IPR007117	Expansin_CBD	ProSiteProfiles	207	287
IPR007118	Expan_Lol_pI	PRINTS	180	196
IPR007118	Expan_Lol_pI	PRINTS	273	287
IPR007118	Expan_Lol_pI	PRINTS	81	99
IPR007118	Expan_Lol_pI	PRINTS	235	249
IPR007118	Expan_Lol_pI	PRINTS	63	78
IPR007118	Expan_Lol_pI	PRINTS	103	121
IPR007112	Expansin/allergen_DPBB_dom	SMART	99	187

No CAZYmes available for this sequence

External Links

No external refs found!