LOC_Os02g52460.1

Description : zinc knuckle (CCHC-type) family protein

Gene families : OG_01_0012850 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012850_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g52460.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g52460.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_199
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_104

Type	GO Term	Name	Evidence	Source
BP	GO:0000075	cell cycle checkpoint signaling	None	Extended
BP	GO:0000076	DNA replication checkpoint signaling	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	GOs from InterProScan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	ISM	GOs from InterProScan
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010564	regulation of cell cycle process	None	Extended
BP	GO:0010948	negative regulation of cell cycle process	None	Extended
BP	GO:0031570	DNA integrity checkpoint signaling	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045786	negative regulation of cell cycle	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048478	obsolete replication fork protection	ISM	GOs from InterProScan
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0051726	regulation of cell cycle	None	Extended
BP	GO:0065007	biological regulation	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901987	regulation of cell cycle phase transition	None	Extended
BP	GO:1901988	negative regulation of cell cycle phase transition	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001878	Znf_CCHC	ProSiteProfiles	9	24
IPR012923	Csm3	Pfam	92	174
IPR001878	Znf_CCHC	Pfam	8	24
IPR001878	Znf_CCHC	SMART	8	24
IPR040038	TIPIN/Csm3/Swi3	PANTHER	5	321
IPR036875	Znf_CCHC_sf	SUPERFAMILY	8	28

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os02g52460.1

Expression Profile

Co-expression Networks

Functional Annotation