LOC_Os02g52540.1

Description : Calcium-binding EF-hand family protein

Gene families : OG_01_0026408 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0026408_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g52540.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g52540.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_67
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_41

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005509	calcium ion binding	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR018247	EF_Hand_1_Ca_BS	ProSitePatterns	28	40
IPR002048	EF_hand_dom	ProSiteProfiles	15	50
IPR002048	EF_hand_dom	CDD	19	79
IPR011992	EF-hand-dom_pair	SUPERFAMILY	14	80
IPR002048	EF_hand_dom	SMART	55	83
IPR002048	EF_hand_dom	SMART	19	47
IPR018247	EF_Hand_1_Ca_BS	ProSitePatterns	64	76
IPR002048	EF_hand_dom	Pfam	21	42
IPR002048	EF_hand_dom	Pfam	59	79
IPR002048	EF_hand_dom	ProSiteProfiles	55	86

No CAZYmes available for this sequence

External Links

No external refs found!