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  5. LOC_Os02g53050.1

LOC_Os02g53050.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0012310 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012310_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g53050.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g53050.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_171
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_189


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 65 252
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 200 234
IPR002885 Pentatricopeptide_rpt Pfam 170 196
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 169 199
IPR011990 TPR-like_helical_dom_sf Gene3D 359 435
IPR002885 Pentatricopeptide_rpt TIGRFAM 275 300
IPR002885 Pentatricopeptide_rpt TIGRFAM 303 337
IPR002885 Pentatricopeptide_rpt TIGRFAM 171 196
IPR002885 Pentatricopeptide_rpt TIGRFAM 202 235
IPR002885 Pentatricopeptide_rpt TIGRFAM 338 366
IPR002885 Pentatricopeptide_rpt Pfam 275 300
IPR002885 Pentatricopeptide_rpt Pfam 375 399
IPR011990 TPR-like_helical_dom_sf Gene3D 253 353
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 301 335
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 270 300
IPR002885 Pentatricopeptide_rpt Pfam 301 348
IPR002885 Pentatricopeptide_rpt Pfam 199 247

No CAZYmes available for this sequence

No external refs found!