LOC_Os02g53680.1

Description : replication protein A 1A

Gene families : OG_01_0012391 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012391_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g53680.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g53680.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_14
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_224

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	ISM	GOs from InterProScan
BP	GO:0006281	DNA repair	ISM	GOs from InterProScan
BP	GO:0006310	DNA recombination	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR007199	Rep_factor-A_N	CDD	10	105
IPR012340	NA-bd_OB-fold	SUPERFAMILY	4	113
IPR013955	Rep_factor-A_C	Pfam	496	645
IPR013955	Rep_factor-A_C	CDD	480	651
IPR031657	REPA_OB_2	Pfam	334	438
IPR004591	Rfa1	PANTHER	4	649
IPR012340	NA-bd_OB-fold	SUPERFAMILY	210	323
IPR007199	Rep_factor-A_N	Pfam	6	106
IPR004365	NA-bd_OB_tRNA	Pfam	225	307
IPR012340	NA-bd_OB-fold	SUPERFAMILY	477	651
IPR004591	Rfa1	TIGRFAM	19	651
IPR012340	NA-bd_OB-fold	SUPERFAMILY	329	457

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os02g53680.1

Expression Profile

Co-expression Networks

Functional Annotation