LOC_Os02g54030.1

Description : Pectin lyase-like superfamily protein

Gene families : OG_01_0013648 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013648_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g54030.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g54030.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_203
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_152

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	ISM	GOs from InterProScan
BP	GO:0005975	carbohydrate metabolic process	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR000743	Glyco_hydro_28	Pfam	4	234
IPR006626	PbH1	SMART	145	166
IPR006626	PbH1	SMART	26	53
IPR006626	PbH1	SMART	116	137
IPR006626	PbH1	SMART	206	227
IPR006626	PbH1	SMART	88	110
IPR006626	PbH1	SMART	54	75
IPR012334	Pectin_lyas_fold	Gene3D	1	240
IPR011050	Pectin_lyase_fold/virulence	SUPERFAMILY	2	250

HMM Family	HMM Length	Query Length	e-Value	Query Start	Query End
GH28	325	278	1.1e-69	3	236

External Links

No external refs found!