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  5. LOC_Os02g56740.1

LOC_Os02g56740.1


Description : Trimeric LpxA-like enzyme


Gene families : OG_01_0004527 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004527_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g56740.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g56740.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_60
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_20


Type GO Term Name Evidence Source
MF GO:0005085 guanyl-nucleotide exchange factor activity ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0009058 biosynthetic process ISM GOs from InterProScan
MF GO:0016779 nucleotidyltransferase activity ISM GOs from InterProScan
MF GO:0031369 translation initiation factor binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR005835 NTP_transferase_dom Pfam 29 173
IPR029044 Nucleotide-diphossugar_trans Gene3D 17 309
IPR044123 W2_eIF2B_epsilon CDD 562 722
IPR035543 eIF-2B_epsilon_N CDD 26 245
IPR001451 Hexapep Pfam 369 397
IPR001451 Hexapep Pfam 340 367
IPR016024 ARM-type_fold SUPERFAMILY 567 725
IPR003307 W2_domain SMART 640 727
IPR029044 Nucleotide-diphossugar_trans SUPERFAMILY 26 403
IPR003307 W2_domain ProSiteProfiles 561 731
IPR003307 W2_domain Pfam 652 731

No CAZYmes available for this sequence

No external refs found!