LOC_Os02g57820.1

Description : AT hook motif DNA-binding family protein

Gene families : OG_01_0007879 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007879_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g57820.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g57820.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_371
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_19

Type	GO Term	Name	Evidence	Source
MF	GO:0000217	DNA secondary structure binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003680	minor groove of adenine-thymine-rich DNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR005175	PPC_dom	CDD	211	325
IPR017956	AT_hook_DNA-bd_motif	SMART	119	131
IPR017956	AT_hook_DNA-bd_motif	SMART	180	192
IPR005175	PPC_dom	Pfam	212	325
IPR017956	AT_hook_DNA-bd_motif	PRINTS	178	189
IPR017956	AT_hook_DNA-bd_motif	PRINTS	119	129
IPR039605	AHL	PANTHER	72	393
IPR005175	PPC_dom	ProSiteProfiles	207	348

No CAZYmes available for this sequence

External Links

No external refs found!