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  5. LOC_Os02g58330.1

LOC_Os02g58330.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0010556 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010556_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os02g58330.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os02g58330.1 No neighbors in network
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_52


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 153 183
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 358 388
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 184 218
IPR002885 Pentatricopeptide_rpt Pfam 286 333
IPR002885 Pentatricopeptide_rpt Pfam 187 214
IPR002885 Pentatricopeptide_rpt Pfam 156 181
IPR002885 Pentatricopeptide_rpt Pfam 361 386
IPR011990 TPR-like_helical_dom_sf Gene3D 42 256
IPR011990 TPR-like_helical_dom_sf Gene3D 261 476
IPR002885 Pentatricopeptide_rpt TIGRFAM 290 323
IPR002885 Pentatricopeptide_rpt TIGRFAM 362 385
IPR002885 Pentatricopeptide_rpt TIGRFAM 187 219
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 287 321

No CAZYmes available for this sequence

No external refs found!