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  5. LOC_Os03g01260.1

LOC_Os03g01260.1


Description : expansin B2


Gene families : OG_01_0000116 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000116_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g01260.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g01260.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_185
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_211


Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM GOs from InterProScan
BP GO:0019953 sexual reproduction ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR007117 Expansin_CBD Pfam 176 259
IPR005795 LolPI PRINTS 178 193
IPR005795 LolPI PRINTS 194 209
IPR005795 LolPI PRINTS 107 117
IPR005795 LolPI PRINTS 87 98
IPR005795 LolPI PRINTS 124 139
IPR005795 LolPI PRINTS 246 263
IPR005795 LolPI PRINTS 226 243
IPR005795 LolPI PRINTS 146 161
IPR036749 Expansin_CBD_sf SUPERFAMILY 175 270
IPR009009 RlpA-like_DPBB Pfam 85 164
IPR007117 Expansin_CBD ProSiteProfiles 187 270
IPR007112 Expansin/allergen_DPBB_dom ProSiteProfiles 68 174
IPR007112 Expansin/allergen_DPBB_dom SMART 85 164
IPR036908 RlpA-like_sf SUPERFAMILY 45 173
IPR036749 Expansin_CBD_sf Gene3D 173 273
IPR007118 Expan_Lol_pI PRINTS 157 173
IPR007118 Expan_Lol_pI PRINTS 67 85
IPR007118 Expan_Lol_pI PRINTS 89 107
IPR007118 Expan_Lol_pI PRINTS 256 270
IPR007118 Expan_Lol_pI PRINTS 47 62
IPR007118 Expan_Lol_pI PRINTS 217 231
IPR036908 RlpA-like_sf Gene3D 32 170

No CAZYmes available for this sequence

No external refs found!