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  5. LOC_Os03g01650.1

LOC_Os03g01650.1


Description : expansin B2


Gene families : OG_01_0025329 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0025329_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g01650.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_2


Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM GOs from InterProScan
BP GO:0019953 sexual reproduction ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR009009 RlpA-like_DPBB Pfam 79 154
IPR036908 RlpA-like_sf SUPERFAMILY 29 165
IPR007117 Expansin_CBD Pfam 170 251
IPR007117 Expansin_CBD ProSiteProfiles 181 262
IPR005795 LolPI PRINTS 100 110
IPR005795 LolPI PRINTS 139 154
IPR005795 LolPI PRINTS 172 187
IPR005795 LolPI PRINTS 238 255
IPR005795 LolPI PRINTS 188 203
IPR005795 LolPI PRINTS 218 235
IPR005795 LolPI PRINTS 80 91
IPR005795 LolPI PRINTS 117 132
IPR007112 Expansin/allergen_DPBB_dom ProSiteProfiles 61 167
IPR036908 RlpA-like_sf Gene3D 23 162
IPR007118 Expan_Lol_pI PRINTS 82 100
IPR007118 Expan_Lol_pI PRINTS 60 78
IPR007118 Expan_Lol_pI PRINTS 40 55
IPR007118 Expan_Lol_pI PRINTS 209 223
IPR007118 Expan_Lol_pI PRINTS 248 262
IPR007118 Expan_Lol_pI PRINTS 150 166
IPR036749 Expansin_CBD_sf SUPERFAMILY 169 262
IPR007112 Expansin/allergen_DPBB_dom SMART 83 157
IPR036749 Expansin_CBD_sf Gene3D 163 263

No CAZYmes available for this sequence

No external refs found!