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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0009246 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009246_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g02430.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g02430.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_147 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_131 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 230 | 265 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 371 | 405 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 20 | 173 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 372 | 417 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 229 | 277 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 122 | 171 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 300 | 349 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 159 | 193 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 266 | 300 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 196 | 225 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 194 | 228 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 175 | 296 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 367 | 450 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 303 | 336 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 375 | 406 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 269 | 301 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 161 | 187 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 196 | 230 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 297 | 366 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 301 | 335 |
No CAZYmes available for this sequence
| No external refs found! |