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  5. LOC_Os03g02970.1

LOC_Os03g02970.1


Description : dicer-like 1


Gene families : OG_01_0001206 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001206_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g02970.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g02970.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_268
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_224


Type GO Term Name Evidence Source
MF GO:0004525 ribonuclease III activity ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0006396 RNA processing ISM GOs from InterProScan
MF GO:0016891 RNA endonuclease activity, producing 5'-phosphomonoesters ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR027417 P-loop_NTPase Gene3D 615 780
IPR038248 Dicer_dimer_sf Gene3D 812 912
IPR003100 PAZ_dom Pfam 1170 1316
IPR005034 Dicer_dimerisation_dom ProSiteProfiles 817 912
IPR014001 Helicase_ATP-bd SMART 263 428
IPR000999 RNase_III_dom SMART 1553 1709
IPR000999 RNase_III_dom SMART 1335 1517
IPR000999 RNase_III_dom ProSitePatterns 1573 1581
IPR001650 Helicase_C SMART 658 744
IPR000999 RNase_III_dom Pfam 1353 1498
IPR000999 RNase_III_dom Pfam 1573 1686
IPR036389 RNase_III_sf Gene3D 1532 1707
IPR036389 RNase_III_sf Gene3D 1318 1510
IPR036389 RNase_III_sf SUPERFAMILY 1531 1705
IPR003100 PAZ_dom SMART 1156 1320
IPR000999 RNase_III_dom ProSiteProfiles 1339 1498
IPR036389 RNase_III_sf SUPERFAMILY 1312 1516
IPR014720 dsRBD_dom SMART 1798 1871
IPR014720 dsRBD_dom SMART 1713 1774
IPR014720 dsRBD_dom ProSiteProfiles 1797 1872
IPR000999 RNase_III_dom CDD 1337 1518
IPR001650 Helicase_C ProSiteProfiles 629 789
IPR036085 PAZ_dom_sf SUPERFAMILY 1167 1296
IPR003100 PAZ_dom ProSiteProfiles 1182 1296
IPR027417 P-loop_NTPase SUPERFAMILY 328 752
IPR000999 RNase_III_dom ProSiteProfiles 1538 1686
IPR000999 RNase_III_dom CDD 1554 1709
IPR027417 P-loop_NTPase Gene3D 262 329
IPR027417 P-loop_NTPase Gene3D 330 480
IPR014720 dsRBD_dom ProSiteProfiles 1712 1775
IPR001650 Helicase_C Pfam 627 742

No CAZYmes available for this sequence

No external refs found!