LOC_Os03g03350.1

Description : Pectin lyase-like superfamily protein

Gene families : OG_01_0001834 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001834_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os03g03350.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os03g03350.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_234
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_43

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	ISM	GOs from InterProScan
BP	GO:0005975	carbohydrate metabolic process	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR011050	Pectin_lyase_fold/virulence	SUPERFAMILY	27	432
IPR006626	PbH1	SMART	234	255
IPR006626	PbH1	SMART	207	233
IPR012334	Pectin_lyas_fold	Gene3D	35	426
IPR000743	Glyco_hydro_28	Pfam	77	418

HMM Family	HMM Length	Query Length	e-Value	Query Start	Query End
GH28	325	459	1e-75	70	420

External Links

No external refs found!